JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECE1_chr1_21212250_21295463	0/0	c0003	2313	39	3	16	13	4	3	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0004	2313	4	0	1	0	1	2	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0005	2313	2	0	0	2	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0006	2313	2	0	1	0	1	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0007	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0008	2313	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0009	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0010	2313	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0011	2313	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0012	2313	1	0	0	1	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0013	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0014	2313	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0015	2313	1	0	1	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0016	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0017	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0018	2313	1	1	0	0	0	0	copy fasta	ECE1	chr1	21212250	21295463
ECE2_chr3_184271022_184298031	1/1	c0001	2298	197	27	26	102	7	33	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0002	2298	170	42	38	70	9	11	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0003	2298	8	5	3	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0004	2298	7	7	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0005	2298	4	0	3	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0006	2298	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0007	2298	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0008	2298	1	0	0	0	0	1	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0009	2298	1	0	0	0	0	1	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0010	2298	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0012	2298	1	1	0	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0013	2298	1	0	1	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0014	2298	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0015	2298	1	0	1	0	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0016	2298	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECE2_chr3_184271022_184298031	0/0	c0017	2298	1	0	0	1	0	0	copy fasta	ECE2	chr3	184271022	184298031
ECEL1_chr2_232474827_232492834	0/1	c0001	2328	375	80	57	174	18	45	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0002	2328	15	0	0	11	0	4	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	1/0	c0003	2328	8	5	2	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0004	2328	5	4	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0005	2328	5	1	4	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0006	2328	3	0	3	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0007	2328	3	0	0	3	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0008	2328	3	0	0	3	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0009	2328	3	0	0	3	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0010	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0011	2328	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0012	2328	1	0	0	0	0	1	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0013	2328	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0014	2328	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0015	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0016	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0017	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834