JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECEL1_chr2_232474827_232492834	0/0	c0018	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0019	2328	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0020	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0021	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0022	2328	1	0	1	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0023	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0024	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0025	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0026	2328	1	0	0	1	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECEL1_chr2_232474827_232492834	0/0	c0027	2328	1	1	0	0	0	0	copy fasta	ECEL1	chr2	232474827	232492834
ECH1_chr19_38810422_38836794	1/0	c0001	987	184	50	23	94	5	11	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/1	c0002	987	134	19	38	53	9	14	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0003	987	38	20	7	0	1	10	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0004	987	27	0	8	14	1	4	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0005	987	21	0	1	17	0	3	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0006	987	5	0	0	4	0	1	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0007	987	3	0	0	3	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0008	987	1	0	0	0	0	1	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0009	987	1	0	1	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0010	987	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0011	987	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0012	987	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0013	987	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0014	987	1	1	0	0	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECH1_chr19_38810422_38836794	0/0	c0015	987	1	0	0	1	0	0	copy fasta	ECH1	chr19	38810422	38836794
ECHDC1_chr6_127283712_127348609	1/1	c0001	906	356	98	59	139	16	42	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	c0002	906	1	0	1	0	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC1_chr6_127283712_127348609	0/0	c0003	906	1	0	0	1	0	0	copy fasta	ECHDC1	chr6	127283712	127348609
ECHDC2_chr1_52890910_52926740	1/1	c0001	879	306	83	49	134	6	32	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	c0002	879	3	2	1	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	c0003	879	3	3	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC2_chr1_52890910_52926740	0/0	c0004	879	2	2	0	0	0	0	copy fasta	ECHDC2	chr1	52890910	52926740
ECHDC3_chr10_11737382_11769070	0/0	c0001	912	173	29	27	95	6	16	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0002	912	80	2	19	44	5	10	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0003	912	59	9	6	39	0	5	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/1	c0004	912	25	2	9	4	5	4	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0005	912	14	6	5	2	0	1	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	1/0	c0006	912	14	12	1	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0007	912	12	1	5	0	1	5	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0008	912	10	9	1	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0009	912	7	0	0	7	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0010	912	5	5	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0011	912	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0012	912	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0013	912	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0014	912	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0015	912	2	2	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0016	912	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0017	912	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0018	912	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070