JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECHDC3_chr10_11737382_11769070	0/0	c0019	912	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0020	912	1	0	1	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0021	912	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0022	912	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0023	912	1	0	0	0	1	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0024	912	1	1	0	0	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0025	912	1	0	0	1	0	0	copy fasta	ECHDC3	chr10	11737382	11769070
ECHDC3_chr10_11737382_11769070	0/0	c0026	912	1	0	0	0	0	1	copy fasta	ECHDC3	chr10	11737382	11769070
ECHS1_chr10_133357485_133378354	0/1	c0001	873	215	18	56	101	15	24	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0002	873	65	22	15	20	2	6	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0003	873	38	33	1	1	0	3	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0004	873	9	7	2	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0005	873	7	6	0	1	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	1/0	c0006	873	7	6	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0007	873	5	5	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0008	873	3	0	0	2	0	1	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0009	873	1	0	0	0	1	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0010	873	1	0	1	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0011	873	1	0	0	1	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0012	873	1	1	0	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECHS1_chr10_133357485_133378354	0/0	c0013	873	1	0	1	0	0	0	copy fasta	ECHS1	chr10	133357485	133378354
ECI1_chr16_2234402_2256587	1/1	c0001	909	402	95	66	194	10	35	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0002	909	13	0	8	1	1	3	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0003	909	6	0	2	0	3	1	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0004	909	3	0	0	0	0	3	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0005	909	2	1	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0006	909	2	0	0	0	0	2	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0007	909	1	1	0	0	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0008	909	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0009	909	1	0	0	0	0	1	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0010	909	1	1	0	0	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0011	890	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0012	909	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0013	909	1	0	0	1	0	0	copy fasta	ECI1	chr16	2234402	2256587
ECI1_chr16_2234402_2256587	0/0	c0014	909	1	0	0	0	0	1	copy fasta	ECI1	chr16	2234402	2256587
ECI2_chr6_4110706_4140575	1/1	c0001	1185	193	33	41	89	4	24	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0002	1185	107	18	17	65	3	4	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0003	1185	32	8	13	2	5	4	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0004	1185	11	11	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0005	1185	8	8	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0006	1185	5	5	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0007	1185	4	0	0	4	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0008	1185	3	0	0	3	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0009	1185	2	2	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0010	1185	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0011	1185	1	0	0	1	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0012	1185	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0013	1185	1	0	1	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECI2_chr6_4110706_4140575	0/0	c0014	1185	1	1	0	0	0	0	copy fasta	ECI2	chr6	4110706	4140575
ECM1_chr1_150503109_150518789	1/1	c0001	1623	269	52	52	130	9	24	copy fasta	ECM1	chr1	150503109	150518789