JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECM1_chr1_150503109_150518789	0/0	c0002	1623	93	2	20	49	5	17	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0003	1623	29	23	3	0	2	1	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0004	1623	11	9	2	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0005	1623	7	6	1	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0006	1623	4	0	0	0	0	4	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0007	1623	2	2	0	0	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0008	1623	1	0	0	1	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0009	1623	1	0	0	0	0	1	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0010	1623	1	0	0	0	0	1	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0011	1623	1	0	0	1	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM1_chr1_150503109_150518789	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	ECM1	chr1	150503109	150518789
ECM2_chr9_92490315_92540990	0/1	c0001	2100	129	6	25	80	4	13	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0002	2100	111	49	15	37	7	3	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	1/0	c0003	2100	88	0	25	47	4	11	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0004	2100	20	1	1	13	1	4	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0005	2100	9	7	2	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0006	2100	6	1	2	0	0	3	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0007	2100	5	5	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0008	2100	4	0	0	0	0	4	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0009	2100	4	3	1	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0010	2100	3	0	0	3	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0011	2100	3	3	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0012	2100	2	0	0	0	2	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0013	2100	2	2	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0014	2100	2	0	2	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0015	2100	2	2	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0016	2100	1	0	0	1	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0017	2100	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0018	2100	1	0	0	0	0	1	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0019	2100	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0020	2100	1	0	0	1	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0021	2100	1	0	1	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0022	2100	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0023	2100	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0024	2100	1	0	0	0	0	1	copy fasta	ECM2	chr9	92490315	92540990
ECM2_chr9_92490315_92540990	0/0	c0025	2100	1	1	0	0	0	0	copy fasta	ECM2	chr9	92490315	92540990
ECPAS_chr9_111355685_111489383	1/0	c0001	5520	199	40	40	94	8	16	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/1	c0002	5520	48	17	17	0	4	9	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0003	5520	36	0	0	27	1	8	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0004	5520	25	7	0	16	0	2	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0005	5520	20	0	1	17	0	2	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0006	5520	11	11	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0007	5520	4	4	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0008	5520	2	0	2	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0009	5520	2	2	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0010	5520	1	0	0	0	1	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0011	5520	1	1	0	0	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0012	5520	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0013	5520	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0014	5520	1	0	0	0	0	1	copy fasta	ECPAS	chr9	111355685	111489383