JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECPAS_chr9_111355685_111489383	0/0	c0015	5520	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECPAS_chr9_111355685_111489383	0/0	c0016	5520	1	0	0	1	0	0	copy fasta	ECPAS	chr9	111355685	111489383
ECRG4_chr2_106060688_106083155	1/1	c0001	447	294	52	64	140	10	26	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0002	447	107	24	8	53	5	17	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0003	447	12	9	0	3	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0004	447	8	8	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0005	447	8	0	6	0	1	1	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0006	447	1	0	0	0	0	1	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0007	447	1	1	0	0	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0008	447	1	0	0	1	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0009	447	1	0	0	1	0	0	copy fasta	ECRG4	chr2	106060688	106083155
ECRG4_chr2_106060688_106083155	0/0	c0010	447	1	0	0	0	0	1	copy fasta	ECRG4	chr2	106060688	106083155
ECSCR_chr5_139443560_139467743	0/1	c0001	618	368	84	70	163	16	34	copy fasta	ECSCR	chr5	139443560	139467743
ECSCR_chr5_139443560_139467743	0/0	c0002	618	1	0	0	1	0	0	copy fasta	ECSCR	chr5	139443560	139467743
ECSIT_chr19_11500929_11534134	1/1	c0001	1296	290	92	59	94	10	33	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0002	1296	9	0	0	9	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0003	1296	3	0	0	3	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0004	1296	2	0	0	0	0	2	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0005	1296	1	0	0	0	0	1	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0006	1296	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0007	1296	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0008	1296	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0009	1296	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0010	1296	1	0	1	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0011	1296	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECSIT_chr19_11500929_11534134	0/0	c0012	1296	1	1	0	0	0	0	copy fasta	ECSIT	chr19	11500929	11534134
ECT2L_chr6_138791087_138909070	1/1	c0001	2715	144	22	38	57	9	16	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0002	2715	65	6	10	36	2	11	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0003	2715	43	7	1	33	0	2	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0004	2715	9	8	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0005	2715	6	3	0	3	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0006	2715	5	5	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0007	2715	5	5	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0008	2715	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0009	2715	3	0	1	1	1	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0010	2715	3	2	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0011	2715	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0012	2715	3	3	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0013	2715	3	2	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0014	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0015	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0016	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0017	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0018	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0019	2715	2	2	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0020	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0021	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0022	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0023	2715	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0024	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070