JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ECT2L_chr6_138791087_138909070	0/0	c0025	2715	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0026	2265	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0027	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0028	2715	1	0	0	0	0	1	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0029	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0030	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0031	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0032	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0033	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0034	2715	1	0	1	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0035	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0036	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0037	2715	1	1	0	0	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2L_chr6_138791087_138909070	0/0	c0038	2715	1	0	0	1	0	0	copy fasta	ECT2L	chr6	138791087	138909070
ECT2_chr3_172745726_172826474	1/1	c0001	2745	292	63	41	132	16	38	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0002	2745	7	5	2	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0003	2745	6	6	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0004	2745	4	4	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0005	2745	2	2	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0006	2745	1	1	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0007	2745	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0008	2745	1	1	0	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0009	2745	1	0	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0010	2745	1	0	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0011	2745	1	0	1	0	0	0	copy fasta	ECT2	chr3	172745726	172826474
ECT2_chr3_172745726_172826474	0/0	c0012	2745	1	0	0	1	0	0	copy fasta	ECT2	chr3	172745726	172826474
EDA2R_chrX_66590637_66644078	0/1	c0001	894	138	2	25	87	5	18	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	c0002	894	59	41	12	0	2	4	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	1/0	c0003	894	21	19	1	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	c0004	894	2	2	0	0	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	c0005	894	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDA2R_chrX_66590637_66644078	0/0	c0006	894	1	0	0	1	0	0	copy fasta	EDA2R	chrX	66590637	66644078
EDARADD_chr1_236389286_236489930	0/1	c0001	648	163	34	27	67	5	29	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	1/0	c0002	648	65	37	16	7	1	3	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0003	648	34	0	5	26	0	3	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0004	648	17	1	5	5	1	5	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0005	648	6	0	0	5	0	1	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0006	648	4	0	2	0	1	1	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0007	648	3	2	1	0	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDARADD_chr1_236389286_236489930	0/0	c0008	648	2	0	0	2	0	0	copy fasta	EDARADD	chr1	236389286	236489930
EDAR_chr2_108889471_108994220	0/1	c0001	1347	92	29	25	6	10	21	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0002	1347	56	33	7	8	2	6	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0003	1347	35	0	14	21	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	1/0	c0004	1347	16	6	4	1	0	4	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0005	1347	5	4	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0006	1347	5	0	1	4	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0007	1347	5	4	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0008	1347	3	3	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0009	1347	2	0	0	2	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0010	1347	1	0	0	0	0	1	copy fasta	EDAR	chr2	108889471	108994220