JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EDAR_chr2_108889471_108994220	0/0	c0011	1347	1	0	1	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0012	1347	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0013	1347	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0014	1347	1	1	0	0	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0015	1347	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDAR_chr2_108889471_108994220	0/0	c0016	1347	1	0	0	1	0	0	copy fasta	EDAR	chr2	108889471	108994220
EDA_chrX_69611113_70044472	0/0	c0001	1176	221	58	52	72	11	28	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	c0002	1176	2	2	0	0	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	c0003	1176	1	0	0	1	0	0	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	c0004	1176	1	0	0	0	0	1	copy fasta	EDA	chrX	69611113	70044472
EDA_chrX_69611113_70044472	0/0	c0005	1176	1	0	0	0	0	1	copy fasta	EDA	chrX	69611113	70044472
EDC3_chr15_74625558_74701024	1/1	c0001	1527	280	69	41	140	11	17	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	c0002	1527	2	0	0	0	0	2	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	c0003	1527	1	0	0	0	0	1	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	c0004	1527	1	0	1	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	c0005	1527	1	1	0	0	0	0	copy fasta	EDC3	chr15	74625558	74701024
EDC3_chr15_74625558_74701024	0/0	c0006	1527	1	0	0	0	1	0	copy fasta	EDC3	chr15	74625558	74701024
EDC4_chr16_67868052_67889499	1/1	c0001	4206	123	26	26	46	6	17	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0002	4206	101	57	20	15	2	7	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0003	4206	8	0	1	0	2	5	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0004	4206	2	2	0	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0005	4206	1	0	1	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0006	4206	1	0	0	0	0	1	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0007	4206	1	1	0	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0008	4206	1	1	0	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0009	4206	1	0	0	1	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDC4_chr16_67868052_67889499	0/0	c0010	4206	1	1	0	0	0	0	copy fasta	EDC4	chr16	67868052	67889499
EDDM13_chr19_56267748_56315454	1/1	c0001	486	385	87	76	162	14	44	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0002	486	2	2	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0003	486	2	2	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0004	486	2	2	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0005	486	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0006	480	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0007	486	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0008	479	1	0	0	1	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM13_chr19_56267748_56315454	0/0	c0009	486	1	1	0	0	0	0	copy fasta	EDDM13	chr19	56267748	56315454
EDDM3A_chr14_20740887_20753380	1/1	c0001	444	233	70	43	80	15	23	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0002	444	147	10	25	96	1	15	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0003	444	55	6	10	30	2	7	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0004	444	6	5	1	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0005	444	2	2	0	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0006	444	1	0	0	0	0	1	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0007	444	1	0	1	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3A_chr14_20740887_20753380	0/0	c0008	444	1	1	0	0	0	0	copy fasta	EDDM3A	chr14	20740887	20753380
EDDM3B_chr14_20763404_20775948	0/0	c0001	444	273	22	43	161	11	36	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/1	c0002	444	104	25	17	58	1	2	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	1/0	c0003	444	95	46	23	9	6	10	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	c0004	444	5	4	1	0	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDDM3B_chr14_20763404_20775948	0/0	c0005	444	3	3	0	0	0	0	copy fasta	EDDM3B	chr14	20763404	20775948
EDEM1_chr3_5182707_5224958	0/1	c0001	1974	315	75	64	133	14	28	copy fasta	EDEM1	chr3	5182707	5224958