JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRE1_chr19_6882579_6945450	0/0	c0047	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0048	2661	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0049	2661	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0050	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0051	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0052	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0053	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0054	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0055	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0056	2661	1	0	0	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0057	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0058	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0059	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0060	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0061	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0062	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0063	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0064	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0065	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0066	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0067	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0068	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE2_chr19_14727392_14783560	0/0	c0001	2472	62	5	19	25	4	9	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0002	2472	37	20	4	6	1	6	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/1	c0003	2472	37	2	10	19	0	5	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0004	2472	10	10	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0005	2472	7	1	3	0	1	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0006	2472	4	0	0	3	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0007	2472	4	4	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0008	2472	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0009	2472	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0010	2472	3	2	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0011	2472	3	0	1	0	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0012	2472	3	1	1	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0013	2472	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0014	2472	3	1	1	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0015	2472	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0016	2472	2	0	2	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0017	2472	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0018	2472	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0019	2472	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0020	2472	2	0	0	0	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0021	2472	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0022	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0023	2472	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0024	2472	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	1/0	c0025	2472	1	0	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0026	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0027	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0028	2472	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560