JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EDEM1_chr3_5182707_5224958	1/0	c0002	1974	30	8	1	14	0	6	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0003	1974	8	0	0	8	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0004	1974	5	5	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0005	1974	3	1	1	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0006	1974	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0007	1974	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0008	1974	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0009	1974	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0010	1974	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0011	1974	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0012	1974	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0013	1974	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0014	1974	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0015	1974	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0016	1974	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0017	1974	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	c0018	1974	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM2_chr20_35110364_35152336	1/1	c0001	1737	255	56	49	110	8	30	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0002	1737	33	31	2	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0003	1737	28	1	6	13	4	4	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0004	1737	7	3	4	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0005	1737	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0006	1737	1	0	1	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0007	1737	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0009	1737	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0010	1737	1	1	0	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0011	1737	1	0	1	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0012	1737	1	0	1	0	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	c0013	1737	1	0	0	1	0	0	copy fasta	EDEM2	chr20	35110364	35152336
EDEM3_chr1_184685237_184759858	1/1	c0001	2799	102	12	19	54	5	10	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0002	2799	101	3	17	65	6	10	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0003	2799	83	56	12	15	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0004	2799	23	12	6	4	1	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0005	2799	4	0	0	4	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0006	2799	3	0	0	3	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0007	2799	2	0	0	2	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0008	2799	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0009	2799	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0010	2799	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0011	2799	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0012	2799	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	c0013	2799	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDF1_chr9_136857119_136871308	1/1	c0001	447	376	89	78	148	16	43	copy fasta	EDF1	chr9	136857119	136871308
EDF1_chr9_136857119_136871308	0/0	c0002	447	1	1	0	0	0	0	copy fasta	EDF1	chr9	136857119	136871308
EDF1_chr9_136857119_136871308	0/0	c0003	447	1	0	0	0	0	1	copy fasta	EDF1	chr9	136857119	136871308
EDIL3_chr5_83935554_84389880	1/1	c0001	1443	124	31	38	32	8	13	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	c0002	1443	21	6	3	6	0	6	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	c0003	1443	6	6	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	c0004	1443	4	4	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880