JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EDIL3_chr5_83935554_84389880	0/0	c0005	1443	1	0	0	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	c0006	1443	1	0	1	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDN1_chr6_12285361_12302194	0/1	c0001	639	302	65	70	143	7	16	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	c0002	639	114	15	9	63	3	24	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	1/0	c0003	639	31	15	7	3	4	1	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	c0004	639	3	0	0	3	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	c0005	639	1	0	0	0	0	1	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	c0006	639	1	1	0	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN2_chr1_41473775_41489683	1/1	c0001	537	431	94	77	200	18	40	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0002	537	2	0	0	2	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0003	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0004	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0005	537	1	0	1	0	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0006	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0007	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0008	537	1	0	0	0	0	1	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0009	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0010	537	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	c0011	537	1	0	0	0	0	1	copy fasta	EDN2	chr1	41473775	41489683
EDN3_chr20_59295611_59330992	1/1	c0001	717	393	94	56	177	16	48	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	c0002	717	2	1	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	c0003	717	2	0	0	2	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	c0004	717	1	1	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDNRA_chr4_147476097_147549954	1/0	c0001	1284	144	31	23	69	2	18	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/1	c0002	1284	131	61	16	40	2	11	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	c0003	1284	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	c0004	1263	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	c0005	1284	1	0	1	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	c0006	1284	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	c0007	1284	1	0	0	0	0	1	copy fasta	EDNRA	chr4	147476097	147549954
EDNRB_chr13_77890487_77923831	0/1	c0001	1329	222	46	35	106	8	26	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0002	1329	166	35	28	80	7	16	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	1/0	c0003	1329	9	7	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0004	1329	3	1	1	0	1	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0005	1329	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0006	1329	1	0	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0007	1329	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	c0010	1329	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDRF1_chr10_125714709_125769139	1/1	c0001	3717	248	58	63	95	9	21	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0002	3717	30	0	2	22	1	5	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0003	3717	12	11	0	0	0	1	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0004	3717	11	8	3	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0005	3717	9	0	0	9	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0006	3717	4	4	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0007	3717	2	2	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0008	3717	2	2	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0009	3717	1	0	0	0	0	1	copy fasta	EDRF1	chr10	125714709	125769139