JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EDRF1_chr10_125714709_125769139	0/0	c0010	3717	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0011	3717	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	c0012	3717	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EEA1_chr12_92765637_92934295	0/0	c0001	4236	72	15	18	19	4	16	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0002	4236	56	24	18	1	3	10	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/1	c0003	4236	45	19	10	5	3	7	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	1/0	c0004	4236	28	21	3	0	2	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0005	4236	10	1	2	6	1	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0006	4236	6	3	1	0	1	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0007	4236	5	0	0	5	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0008	4236	5	4	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0009	4236	4	0	2	2	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0010	4236	4	4	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0011	4236	2	2	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0012	4236	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0013	4236	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0014	4236	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0015	4236	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0016	4236	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0017	4236	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	c0018	4236	1	0	0	0	0	1	copy fasta	EEA1	chr12	92765637	92934295
EED_chr11_86239753_86283810	1/0	c0001	1326	274	72	41	126	8	26	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/1	c0002	1326	116	12	19	62	6	16	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	c0003	1326	1	0	0	1	0	0	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	c0004	1326	1	0	0	1	0	0	copy fasta	EED	chr11	86239753	86283810
EEF1A1_chr6_73510750_73526032	1/1	c0001	1389	397	80	66	196	17	36	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0002	1389	13	6	0	7	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0003	1389	7	6	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0004	1389	2	2	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0005	1389	2	2	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0006	1389	1	0	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	c0008	1389	1	0	0	0	1	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A2_chr20_63483014_63504083	1/1	c0001	1392	145	32	40	52	6	13	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0002	1392	84	28	18	16	8	14	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0003	1392	68	0	12	52	2	2	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0004	1392	27	0	9	15	0	3	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0005	1392	16	16	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0006	1392	10	0	0	1	0	9	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0007	1392	8	8	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0008	1392	4	0	0	4	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0009	1392	3	2	1	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0010	1392	3	0	0	3	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0011	1392	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0012	1392	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0013	1392	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0015	1392	1	0	0	0	0	1	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	c0016	1392	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1AKMT1_chr13_20723731_20778961	1/1	c0001	645	323	70	53	138	18	42	copy fasta	EEF1AKMT1	chr13	20723731	20778961