JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EEF1AKMT1_chr13_20723731_20778961	0/0	c0002	645	14	13	1	0	0	0	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT1_chr13_20723731_20778961	0/0	c0003	645	11	7	2	0	0	2	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT2_chr10_124752834_124796887	1/0	c0001	876	343	78	38	177	11	38	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/1	c0002	876	8	0	2	0	3	2	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0003	887	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0004	876	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0005	876	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0006	876	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0007	876	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0008	876	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	c0009	876	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT3_chr12_57767614_57787541	1/1	c0001	681	206	66	54	55	8	21	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	c0002	681	155	24	22	84	6	19	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	c0003	681	1	0	0	1	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT4_chr3_184244672_184263759	0/0	c0001	768	196	37	31	90	9	29	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0002	768	94	21	13	55	1	4	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/1	c0003	768	38	9	15	3	3	7	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0004	768	23	2	7	8	2	4	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0005	768	17	15	2	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0006	768	3	3	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	1/0	c0007	768	2	0	1	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0008	768	2	2	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0009	768	1	1	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0010	768	1	0	0	0	1	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	c0011	768	1	0	1	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1B2_chr2_206154895_206167928	1/1	c0001	678	352	80	64	157	12	37	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1B2_chr2_206154895_206167928	0/0	c0002	678	6	0	2	3	0	1	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1B2_chr2_206154895_206167928	0/0	c0003	678	2	2	0	0	0	0	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1D_chr8_143574728_143602415	0/0	c0001	1944	106	5	31	53	5	12	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0002	1944	103	20	14	61	0	8	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/1	c0003	1944	91	30	18	25	2	15	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0004	1944	27	4	3	18	0	2	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0005	1944	12	12	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0006	1944	9	8	1	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0007	1944	6	6	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0008	1944	5	0	0	5	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0009	1944	4	0	0	4	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0010	1944	3	0	0	3	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0011	1944	2	0	2	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0012	1944	2	0	0	0	1	1	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0013	1944	2	2	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0014	1944	2	0	2	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0015	1944	2	0	0	0	0	2	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0016	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0017	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0018	1944	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0019	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0020	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0021	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0022	1944	1	0	1	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415