JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EEF1D_chr8_143574728_143602415	0/0	c0023	1944	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0024	1944	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0025	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0026	1944	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0027	1944	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	c0028	1944	1	0	0	1	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1E1_chr6_8074395_8107548	1/1	c0001	525	437	93	82	206	14	40	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	c0002	525	2	0	0	2	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	c0003	525	2	0	0	2	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	c0004	525	1	1	0	0	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1G_chr11_62554596_62578891	1/1	c0001	1314	217	72	44	70	11	18	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	c0002	1314	41	7	16	10	1	7	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	c0003	1314	1	0	0	1	0	0	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	c0004	1314	1	0	0	0	0	1	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	c0005	1314	1	0	0	1	0	0	copy fasta	EEF1G	chr11	62554596	62578891
EEF1G_chr11_62554596_62578891	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	EEF1G	chr11	62554596	62578891
EEF2KMT_chr16_5079284_5102795	0/0	c0001	993	149	7	22	81	12	27	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/1	c0002	993	127	43	24	45	3	11	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0003	993	49	6	19	20	1	3	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0004	993	32	0	6	25	0	1	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	1/0	c0005	993	21	16	3	0	0	1	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0006	993	7	2	3	0	0	2	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0007	993	6	6	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0008	993	6	0	3	2	0	1	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0009	993	6	0	0	6	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0010	993	5	5	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0011	993	4	3	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0012	993	4	0	0	4	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0013	993	3	1	1	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0014	993	2	0	0	2	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0015	993	2	1	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0016	993	2	0	0	2	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0017	993	2	2	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0018	993	2	2	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0019	993	1	0	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0020	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0021	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0022	993	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0023	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0024	993	1	0	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0025	993	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0026	993	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0027	993	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0028	993	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0029	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0030	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	c0031	993	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2K_chr16_22201278_22293738	0/0	c0001	2178	106	44	26	19	5	12	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0002	2178	90	20	10	49	2	9	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0003	2178	46	0	8	29	0	9	copy fasta	EEF2K	chr16	22201278	22293738