JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EEF2K_chr16_22201278_22293738	0/0	c0004	2178	30	24	1	5	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0005	2178	4	2	1	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/1	c0006	2178	2	0	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0007	2178	2	0	1	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0008	2178	1	0	0	0	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0009	2178	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0010	2178	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0011	2178	1	0	0	0	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	1/0	c0012	2178	1	0	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0013	2178	1	0	0	0	1	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0014	2178	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0015	2178	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0016	2178	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	c0017	2178	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2_chr19_3971056_3990463	0/0	c0001	2577	265	17	60	148	12	28	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0002	2577	48	46	2	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	1/0	c0003	2577	24	2	10	3	2	6	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0004	2577	19	1	4	3	0	11	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0005	2577	11	11	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0006	2577	8	2	0	6	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0007	2577	7	7	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0008	2577	5	0	0	5	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0009	2577	3	3	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0010	2577	2	2	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0011	2577	2	2	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0012	2577	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0013	2577	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0014	2577	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0015	2577	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0016	2577	1	0	0	0	0	1	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0017	2577	1	0	1	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0018	2577	1	0	1	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0019	2577	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	c0020	2577	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEFSEC_chr3_128148481_128413646	0/1	c0001	1791	219	42	40	104	9	23	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0002	1791	27	10	8	0	3	6	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0003	1791	6	4	2	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0004	1791	5	5	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0005	1791	3	3	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	1/0	c0006	1791	3	2	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0007	1791	2	2	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0008	1791	2	1	1	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0009	1791	1	0	0	1	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0010	1791	1	0	0	1	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0011	1791	1	0	0	0	0	1	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0012	1791	1	0	1	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	c0013	1791	1	1	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEIG1_chr9_127935582_127985989	0/1	c0001	1155	191	62	34	63	6	25	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	1/0	c0002	1155	128	21	8	79	2	17	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	c0003	1155	12	0	0	12	0	0	copy fasta	EEIG1	chr9	127935582	127985989