JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EEIG1_chr9_127935582_127985989	0/0	c0004	1155	6	4	2	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	c0005	1155	3	3	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	c0006	1155	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG2_chr1_108555100_108644322	1/1	c0001	1083	272	76	54	116	0	24	copy fasta	EEIG2	chr1	108555100	108644322
EEPD1_chr7_36148254_36306538	0/1	c0001	1710	273	51	56	121	10	34	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0002	1710	17	2	7	5	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0003	1710	17	5	3	6	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0004	1710	16	10	1	3	1	1	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	1/0	c0005	1710	10	7	1	1	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0006	1710	3	0	2	0	1	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0007	1710	3	0	0	3	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0008	1710	1	0	0	0	0	1	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0009	1710	1	0	0	1	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0010	1710	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0011	1710	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0012	1710	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0013	1710	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	c0014	1710	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EFCAB10_chr7_105560124_105586493	0/1	c0001	2402	260	29	53	132	11	34	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0002	2406	50	7	14	21	4	4	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0003	2403	26	2	1	17	1	5	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0004	2402	18	0	1	17	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0005	2402	17	15	2	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	1/0	c0006	2403	13	9	1	2	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0007	2403	13	13	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0008	2402	5	5	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0009	2402	4	4	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0010	2403	3	0	2	1	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0011	2402	2	0	0	0	2	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0012	2402	2	0	2	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0013	2402	2	0	2	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0014	2406	2	2	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0015	2403	2	2	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0016	2402	1	0	0	1	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0017	2406	1	0	0	1	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0018	2402	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0019	2402	1	0	0	1	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0020	2407	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0021	2402	1	0	0	0	0	1	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0022	2402	1	0	0	1	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0023	2402	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	c0024	2403	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB11_chr14_89789669_89959730	1/0	c0001	492	158	30	33	66	6	22	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/1	c0002	492	64	9	13	29	1	11	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0003	492	23	9	3	7	1	3	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0004	492	13	13	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0005	492	10	8	2	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0006	492	4	4	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0007	492	3	2	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730