JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCAB11_chr14_89789669_89959730	0/0	c0008	492	3	3	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0009	492	3	3	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0010	492	2	2	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	c0011	492	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB12_chr3_129396321_129433636	1/0	c0001	1719	165	25	40	61	12	26	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0002	1719	90	12	12	61	0	5	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0003	1719	32	2	2	27	0	1	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/1	c0004	1719	23	7	6	3	2	4	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0005	1719	15	11	4	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0006	1719	14	7	1	2	0	4	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0007	1719	10	5	4	0	1	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0008	1719	6	0	4	0	1	1	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0009	1719	6	6	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0010	1719	5	4	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0011	1719	4	4	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0012	1719	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0013	1719	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0014	1719	2	2	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0015	1719	2	0	0	1	0	1	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0016	1719	1	0	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0017	1719	1	0	0	1	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0018	1719	1	0	0	1	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0019	1719	1	1	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0020	1719	1	1	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0021	1719	1	0	0	1	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0022	1719	1	1	0	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	c0023	1719	1	0	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB13_chr17_47318955_47446312	0/0	c0001	2921	116	34	19	44	4	15	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	1/0	c0002	2922	76	15	16	31	4	9	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0003	2922	38	3	7	22	1	5	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0004	2922	29	2	0	26	1	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0005	2922	27	0	1	20	0	6	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0006	2921	13	2	8	0	2	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0007	2922	9	0	0	9	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0008	2922	9	5	3	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0009	2922	6	0	0	6	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0010	2922	6	6	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0011	2922	4	4	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0012	2922	4	0	0	4	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/1	c0013	2921	3	0	2	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0014	2922	2	0	0	2	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0015	2921	2	0	0	2	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0016	2922	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0017	2922	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0018	2922	1	0	0	0	0	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0019	2922	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0020	2922	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0021	2922	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0022	2921	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0023	2921	1	0	0	0	0	1	copy fasta	EFCAB13	chr17	47318955	47446312