JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCAB13_chr17_47318955_47446312	0/0	c0024	2921	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0025	2921	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0026	2921	1	1	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	c0027	2922	1	0	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB14_chr1_46670159_46724114	1/1	c0001	1488	353	80	58	160	12	41	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0002	1488	6	0	0	6	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0003	1488	5	5	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0004	1488	5	5	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0005	1488	1	0	0	0	0	1	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0006	1488	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0008	1488	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB2_chr1_244964682_245092837	1/1	c0001	489	201	67	28	85	6	13	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	c0002	489	88	15	20	40	4	9	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	c0003	489	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB3_chr17_62375553_62421480	0/0	c0001	1317	322	92	59	137	14	20	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0002	1317	38	0	10	22	0	6	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0003	1317	3	3	0	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0004	1317	2	2	0	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0005	1317	1	1	0	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0006	1317	1	0	1	0	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB3_chr17_62375553_62421480	0/0	c0007	1317	1	0	0	1	0	0	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB5_chr17_29936634_30113452	0/1	c0001	4512	118	39	28	29	7	14	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0002	4512	70	6	25	23	3	13	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0003	4512	18	13	3	0	2	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0004	4509	6	6	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0005	4512	4	0	0	3	0	1	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0006	4512	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0007	4512	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0008	4512	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0009	4509	3	3	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0010	4512	2	0	2	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0011	4512	2	2	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0012	4512	2	0	0	0	0	2	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0013	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0014	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0015	4512	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0016	4512	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0017	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0018	4512	1	0	0	0	1	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0019	4512	1	0	0	0	0	1	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0020	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0021	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0022	4512	1	0	0	0	1	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0023	4512	1	1	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0024	4512	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	1/0	c0025	4512	1	0	0	0	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	c0026	4512	1	0	0	0	0	1	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB6_chr22_43523778_43817305	0/0	c0001	4506	83	17	15	40	1	10	copy fasta	EFCAB6	chr22	43523778	43817305