JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCAB6_chr22_43523778_43817305	0/0	c0002	4506	34	25	5	1	1	2	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/1	c0003	4506	33	0	4	21	2	5	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0004	4506	18	1	2	11	2	2	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0005	4506	17	0	1	12	2	2	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0006	4506	15	5	5	1	4	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0007	4506	9	8	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0008	4506	7	0	1	6	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0009	4506	6	0	0	6	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0010	4506	5	5	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0011	4506	5	0	3	0	2	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0012	4506	5	0	0	2	0	3	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0013	4506	5	2	2	0	1	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0014	4506	5	5	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0015	4506	3	0	3	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0016	4506	3	0	1	0	1	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0017	4506	2	0	0	0	0	2	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0018	4506	2	2	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0019	4506	2	1	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0020	4506	2	0	0	1	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0021	4506	2	0	0	1	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0022	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0023	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0024	4506	1	0	0	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0025	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0026	4506	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0027	4506	1	0	0	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0028	4506	1	0	0	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0029	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0030	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0031	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0032	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0033	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0034	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0035	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0036	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0037	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0038	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0039	4506	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	1/0	c0040	4506	1	0	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0041	4506	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0042	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0043	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0044	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0045	4506	1	0	1	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0046	4506	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0047	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	c0048	4506	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB7_chr1_63518525_63577693	1/1	c0001	1890	119	11	23	71	3	9	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0002	1890	111	16	31	46	2	16	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0003	1890	66	5	15	38	1	7	copy fasta	EFCAB7	chr1	63518525	63577693