Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRE2_chr19_14727392_14783560	0/0	c0029	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0030	2472	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0031	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0032	2472	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0033	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0034	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0035	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0036	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0037	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0038	2472	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0039	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0040	2472	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0041	2472	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0042	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0043	2472	1	0	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	c0044	2472	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE3_chr19_14614117_14679844	0/0	c0001	1959	136	27	24	60	5	20	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/1	c0002	1959	57	2	19	23	2	10	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0003	1959	44	12	13	7	5	7	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0004	1959	32	8	6	15	0	3	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0005	1959	28	2	1	22	0	3	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0006	1959	24	9	5	10	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0007	1959	8	8	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0008	1959	7	0	0	7	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0009	1959	5	5	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0010	1959	4	4	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0011	1959	2	0	0	2	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0012	1959	2	2	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0013	1959	2	2	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0014	1959	2	0	1	0	1	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0015	1959	2	0	0	0	2	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0016	1959	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0017	1959	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0018	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0019	1959	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0020	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0021	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0022	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0023	1959	1	0	0	0	0	1	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0024	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0025	1959	1	0	0	0	1	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0026	1959	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	1/0	c0027	1959	1	0	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0028	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0029	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0030	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0031	1959	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	c0032	1959	1	0	1	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE5_chr19_14376444_14413723	1/1	c0001	2508	226	53	52	80	11	28	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0002	2508	80	3	7	54	2	14	copy fasta	ADGRE5	chr19	14376444	14413723