JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCAB7_chr1_63518525_63577693	0/0	c0004	1890	26	23	3	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0005	1890	13	7	0	3	0	3	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0006	1890	9	7	2	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0007	1890	6	5	1	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0008	1890	5	5	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0009	1890	4	0	0	4	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0010	1890	4	4	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0011	1890	3	0	0	3	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0012	1890	1	0	0	0	0	1	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0013	1890	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0014	1890	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0015	1890	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0016	1890	1	0	0	1	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0017	1890	1	0	1	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0018	1890	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	c0019	1890	1	1	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB8_chr20_32853923_32966845	1/0	c0001	3867	73	11	19	29	2	11	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0002	3867	50	24	2	17	1	6	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0003	3867	15	5	1	9	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0004	3867	14	1	4	1	4	4	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0005	3867	12	0	10	0	0	2	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0006	3867	7	4	0	3	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0007	3867	6	0	2	0	1	3	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0008	3868	5	1	0	3	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0009	3867	5	2	0	2	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0010	3867	5	0	4	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0011	3867	4	4	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0012	3867	4	0	3	0	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0013	3868	3	2	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0014	3867	3	0	0	2	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0015	3867	3	3	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/1	c0016	3867	3	0	0	0	1	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0017	3867	3	3	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0018	3867	3	1	2	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0019	3867	3	2	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0020	3867	3	0	2	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0021	3867	2	0	0	2	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0022	3867	2	0	0	0	0	2	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0023	3867	2	2	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0024	3867	2	0	1	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0025	3867	2	1	0	0	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0026	3867	2	1	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0027	3867	2	1	0	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0028	3867	2	1	0	0	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0029	3867	2	0	0	1	0	1	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0030	3867	2	2	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0031	3867	2	0	2	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0032	3867	2	2	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0033	3868	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0034	3868	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845