JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCAB8_chr20_32853923_32966845	0/0	c0035	3868	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0036	3868	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0037	3868	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0038	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0039	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0040	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0041	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0042	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0043	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0044	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0045	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0046	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0047	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0048	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0049	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0050	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0051	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0052	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0053	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0054	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0055	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0056	3867	1	0	0	1	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0057	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0058	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0059	3868	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0060	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0061	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0062	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0063	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0064	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0065	3867	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0066	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0067	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	c0068	3867	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB9_chr5_172189172_172208454	1/1	c0001	594	346	79	51	161	13	40	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	c0002	594	31	3	19	4	1	4	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	c0003	594	16	16	0	0	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	c0004	594	13	0	4	9	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	c0005	594	1	0	0	1	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	c0006	594	1	0	0	1	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCC1_chr3_128996304_129045742	0/0	c0001	1800	130	45	25	54	1	5	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	1/0	c0002	1800	84	4	23	37	4	15	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0003	1800	72	16	16	23	5	12	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0004	1800	16	9	0	5	0	2	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0005	1800	13	8	5	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0006	1800	12	0	0	11	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0007	1800	5	0	0	4	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0008	1800	4	4	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0009	1800	3	0	0	0	0	3	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0010	1800	2	0	0	2	0	0	copy fasta	EFCC1	chr3	128996304	129045742