JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFCC1_chr3_128996304_129045742	0/0	c0011	1800	2	0	0	2	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0012	1800	2	0	2	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0013	1328	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0014	1800	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0015	1800	1	0	0	1	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/1	c0016	1800	1	0	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0017	1800	1	0	0	1	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0018	1800	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0019	1800	1	0	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0020	1800	1	0	0	0	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	c0021	1800	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFEMP1_chr2_55860967_55928782	1/1	c0001	1482	323	73	52	150	13	33	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0002	1482	12	11	1	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0003	1482	7	6	1	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0004	1482	4	0	3	0	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0005	1482	1	1	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0006	1482	1	1	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0007	1482	1	0	0	0	1	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	c0008	1482	1	0	1	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP2_chr11_65861441_65877800	0/0	c0001	1332	243	49	42	130	3	19	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/1	c0002	1332	92	9	19	37	7	19	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	1/0	c0003	1332	35	31	3	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	c0004	1332	1	0	0	1	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	c0005	1356	1	0	1	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	c0006	1332	1	1	0	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	c0007	1332	1	0	1	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFHB_chr3_19874472_19939217	1/0	c0001	2502	98	5	22	54	5	11	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0002	2502	35	9	3	16	1	6	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/1	c0003	2502	33	0	20	4	5	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0004	2502	33	3	10	14	3	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0005	2502	20	0	0	15	0	5	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0006	2502	15	10	1	0	1	3	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0007	2502	14	6	6	0	0	2	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0008	2502	14	14	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0009	2502	13	13	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0010	2502	9	8	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0011	2502	8	8	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0012	2502	6	5	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0013	2502	5	2	0	2	1	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0014	2502	4	0	2	0	0	2	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0015	2502	3	3	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0016	2502	3	2	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0017	2502	3	0	2	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0018	2502	3	2	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0019	2502	2	1	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0020	2502	2	0	1	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0021	2502	2	1	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0022	2502	2	0	1	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0023	2502	1	1	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0024	2502	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217