JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFHB_chr3_19874472_19939217	0/0	c0025	2502	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0026	2502	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0027	2502	1	1	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0028	2502	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0029	2502	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0030	2502	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0031	2502	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0032	2502	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0033	2502	1	0	1	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0034	2502	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0035	2502	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0036	2502	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0037	2408	1	0	0	0	0	1	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0038	2502	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	c0039	2502	1	0	0	1	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHC1_chr6_52415342_52502198	1/1	c0001	1923	288	47	51	142	10	36	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0002	1923	26	21	4	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0003	1923	25	3	6	12	2	2	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0004	1923	22	1	2	14	1	4	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0005	1923	9	2	4	0	3	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0006	1923	6	6	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0007	1923	5	5	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0008	1923	4	3	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0009	1923	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0010	1923	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0011	1923	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0012	1923	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0013	1923	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0014	1923	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	c0015	1923	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC2_chrX_44142872_44348672	1/1	c0001	2250	163	45	24	69	5	18	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0002	2250	18	3	9	6	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0003	2250	12	1	9	0	0	2	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0004	2250	5	3	2	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0005	2250	4	0	0	4	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0006	2250	4	4	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0007	2250	3	3	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0008	2250	2	0	0	2	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0009	2250	2	1	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0010	2250	2	0	0	2	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0011	2251	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0013	2249	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0014	2249	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0015	2250	1	0	1	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	c0016	2251	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHD1_chr2_232628604_232687776	1/1	c0001	720	151	62	27	32	10	18	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0002	720	72	8	22	25	4	13	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0003	720	69	4	7	54	0	4	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0004	720	64	10	1	51	2	0	copy fasta	EFHD1	chr2	232628604	232687776