JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFHD1_chr2_232628604_232687776	0/0	c0005	720	10	4	0	2	0	4	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0006	720	5	5	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0007	720	4	0	4	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0008	720	2	0	1	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0009	720	1	0	0	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0010	720	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0011	720	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0012	720	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	c0013	720	1	0	0	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD2_chr1_15404888_15435339	1/1	c0001	723	404	84	83	173	16	46	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	c0002	723	18	15	3	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	c0003	723	1	0	0	1	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	c0004	723	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFL1_chr15_82125233_82267734	0/0	c0001	3363	86	2	16	65	0	3	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0002	3363	73	21	5	40	2	5	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0003	3363	69	9	10	36	2	12	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0004	3363	60	3	20	23	4	10	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/1	c0005	3363	24	8	9	0	4	2	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0006	3363	11	8	1	2	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0007	3363	7	7	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0008	3363	7	7	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0009	3363	6	0	0	3	1	2	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0010	3363	6	6	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0011	3363	3	0	3	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0012	3363	2	2	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0013	3363	2	1	1	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0014	3363	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0015	3363	1	0	0	0	0	1	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0016	3363	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0017	3363	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0018	3363	1	0	0	1	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0019	3363	1	0	1	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0020	3363	1	0	0	0	1	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0021	3363	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	1/0	c0022	3363	1	0	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0023	3363	1	0	0	0	0	1	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0024	3363	1	0	0	1	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	c0025	3363	1	0	0	1	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFNA1_chr1_155122876_155139899	1/1	c0001	618	245	75	41	94	10	23	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	c0002	618	95	13	25	22	8	27	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	c0003	618	6	6	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	c0004	618	2	2	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	c0005	618	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	c0006	618	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA2_chr19_1280873_1306431	1/1	c0001	642	289	82	74	88	10	33	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	c0002	642	3	3	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	c0003	642	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	c0004	642	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA3_chr1_155073837_155092538	1/1	c0001	717	292	78	57	105	14	36	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	c0002	717	31	3	8	3	4	13	copy fasta	EFNA3	chr1	155073837	155092538