JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFNA3_chr1_155073837_155092538	0/0	c0003	717	9	9	0	0	0	0	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	c0004	705	2	0	1	0	0	1	copy fasta	EFNA3	chr1	155073837	155092538
EFNA4_chr1_155058740_155074553	1/1	c0001	606	333	94	67	104	18	48	copy fasta	EFNA4	chr1	155058740	155074553
EFNA4_chr1_155058740_155074553	0/0	c0002	606	1	0	1	0	0	0	copy fasta	EFNA4	chr1	155058740	155074553
EFNA5_chr5_107371894_107675937	0/0	c0001	687	190	68	48	50	10	14	copy fasta	EFNA5	chr5	107371894	107675937
EFNB1_chrX_68824021_68847160	1/1	c0001	1041	323	70	57	148	13	33	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	c0002	1041	7	6	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	c0003	1041	2	0	2	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	c0004	1048	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	c0006	1042	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB2_chr13_106484745_106540662	1/1	c0001	1002	352	90	70	140	10	40	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	c0002	1002	2	0	2	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	c0003	1002	2	0	0	2	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB3_chr17_7700202_7716372	1/1	c0001	1023	422	87	83	188	18	44	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0002	1023	4	4	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0003	1023	4	3	1	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0004	1023	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0005	1023	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0006	1034	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	c0007	1023	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFR3A_chr8_131899093_132018642	1/0	c0001	2466	184	29	29	104	5	16	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/1	c0002	2466	144	38	31	53	8	13	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0003	2466	55	4	16	23	3	9	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0004	2466	7	7	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0005	2466	3	0	0	3	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0006	2466	3	3	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0007	2466	3	2	1	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0008	2466	2	2	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0009	2466	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0010	2466	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0011	2466	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0012	2466	1	0	1	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0013	2466	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0014	2466	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0015	2466	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0016	2466	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0017	2466	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0018	2466	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	c0019	2466	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3B_chr2_25037076_25164135	0/0	c0001	2454	171	50	26	70	3	22	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0002	2454	83	26	20	30	4	3	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	1/1	c0003	2454	33	3	10	7	3	8	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0004	2454	4	0	0	4	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0005	2454	4	4	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0006	2454	2	0	0	2	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0007	2454	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0008	2454	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0009	2454	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0010	2454	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135