JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EFR3B_chr2_25037076_25164135	0/0	c0011	2454	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0012	2454	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0013	2454	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0014	2454	1	0	0	0	0	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	c0015	2454	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFS_chr14_23351406_23370172	1/1	c0001	1686	217	18	45	117	6	29	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0002	1686	95	39	11	41	0	4	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0003	1686	34	13	0	13	2	6	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0004	1686	16	10	4	0	1	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0005	1686	10	9	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0006	1686	5	0	3	0	2	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0007	1686	5	5	0	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0008	1686	4	3	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0009	1686	3	0	0	3	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0010	1686	2	0	2	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0011	1686	2	1	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0012	1686	2	1	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0013	1686	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0014	1686	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0015	1686	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0016	1686	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0017	1686	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0018	1686	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0019	1686	1	1	0	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0020	1686	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	c0021	1686	1	0	0	0	1	0	copy fasta	EFS	chr14	23351406	23370172
EFTUD2_chr17_44844948_44904445	1/1	c0001	2919	293	71	60	120	10	30	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0002	2919	69	19	12	24	6	8	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0003	2919	2	0	0	2	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0004	2919	1	1	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0005	2919	1	0	0	1	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0006	2919	1	0	0	1	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0007	2919	1	1	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0008	2919	1	0	0	1	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	c0009	2919	1	0	0	1	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EGFL6_chrX_13564601_13638575	1/1	c0001	1662	206	29	37	101	11	26	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0002	1662	24	0	0	24	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0003	1662	19	15	3	0	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0004	1662	12	2	3	5	0	2	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0005	1662	9	8	1	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0006	1662	5	0	3	2	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0007	1662	4	1	0	1	0	2	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0008	1662	3	2	1	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0009	1662	2	2	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0010	1662	2	2	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0011	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0012	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0013	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0014	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0015	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575