JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EGFL6_chrX_13564601_13638575	0/0	c0016	1662	1	0	1	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0017	1665	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0018	1662	1	0	1	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0019	1662	1	0	0	0	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0020	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0021	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0022	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0023	1662	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0024	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0025	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	c0026	1662	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL7_chr9_136657916_136677678	1/1	c0001	822	346	74	60	159	11	40	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0002	822	67	18	16	25	3	5	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0003	822	3	3	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0004	822	2	2	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0005	822	2	0	0	1	0	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0006	822	2	0	0	0	2	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0007	822	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0008	822	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0009	822	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0010	822	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0011	822	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0012	822	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0013	822	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0014	822	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0015	822	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	c0016	822	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL8_chr6_32159595_32173281	0/1	c0001	882	380	68	72	195	12	32	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0002	882	40	19	7	3	4	7	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0003	882	7	1	0	5	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0004	882	2	2	0	0	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0005	882	1	0	0	1	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0006	882	1	0	1	0	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0007	882	1	0	0	0	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	c0008	882	1	0	0	0	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFLAM_chr5_38253559_38470480	1/0	c0001	3030	72	19	17	18	5	12	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/1	c0002	3030	32	13	7	9	1	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0003	3030	13	10	1	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0004	3030	12	8	2	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0005	3030	7	1	1	2	2	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0006	3030	6	2	2	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0007	3030	4	0	1	3	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0008	3030	3	3	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0009	3030	3	2	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0010	3030	3	3	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0011	3030	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0012	3030	2	1	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0013	3030	2	1	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0014	3030	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0015	3030	2	0	2	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480