JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EGFLAM_chr5_38253559_38470480	0/0	c0016	3030	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0017	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0018	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0019	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0020	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0021	3030	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0022	3030	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0023	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0024	3030	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0025	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0026	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0027	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0028	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0029	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0030	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0031	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0032	3030	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0033	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0034	3030	1	0	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0035	3030	1	0	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0036	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0037	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0038	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	c0039	3030	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFR_chr7_55014017_55216628	0/0	c0001	3633	38	21	6	7	0	4	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0002	3633	27	2	10	11	1	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0003	3633	25	12	7	1	2	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0004	3633	24	14	6	0	2	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0005	3633	19	8	6	1	0	4	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0006	3633	12	1	5	0	3	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0007	3633	12	1	6	1	1	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0008	3633	9	3	1	0	3	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0009	3633	8	0	0	8	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	1/0	c0010	3633	8	2	3	2	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/1	c0011	3633	6	2	3	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0012	3633	5	5	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0013	3633	5	4	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0014	3633	4	0	2	0	0	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0015	3633	4	0	2	0	0	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0016	3633	4	0	0	3	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0017	3633	3	0	0	0	0	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0018	3633	3	0	0	3	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0019	3633	3	3	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0020	3633	2	1	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0021	3633	2	1	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0022	3633	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0023	3633	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0024	3633	2	0	1	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0025	3633	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0026	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628