JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EGFR_chr7_55014017_55216628	0/0	c0027	3633	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0028	3633	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0029	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0030	3633	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0031	3633	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0032	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0033	3633	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0034	3633	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0035	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0036	3633	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0037	3633	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0038	3633	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0039	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0040	3633	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0041	3633	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0042	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0043	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0044	3633	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	c0045	3633	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGF_chr4_109907883_110018766	0/0	c0001	3624	124	39	21	58	0	6	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0002	3624	81	7	17	43	5	9	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0003	3625	44	0	0	36	0	8	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0004	3624	39	1	5	29	0	4	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0005	3624	20	16	2	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	1/0	c0006	3624	14	1	5	0	1	6	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0007	3624	8	0	3	0	2	3	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0008	3624	7	0	0	7	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0009	3624	7	0	0	7	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0010	3624	5	4	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0011	3624	4	0	0	4	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0012	3624	3	3	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0013	3624	3	0	0	0	1	2	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0014	3624	3	3	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0015	3625	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0016	3624	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0017	3624	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0018	3624	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0019	3624	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0020	3624	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/1	c0021	3624	1	0	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0022	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0023	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0024	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0025	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0026	3624	1	0	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0027	3624	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0028	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0029	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0030	3624	1	0	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0031	3625	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766