Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRE5_chr19_14376444_14413723	0/0	c0003	2508	20	3	12	3	1	1	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0004	2508	5	5	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0005	2508	5	5	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0006	2508	4	4	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0007	2508	3	3	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0008	2508	3	3	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0009	2508	2	0	2	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0010	2508	2	0	0	2	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0011	2508	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0012	2508	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0013	2508	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0014	2508	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0015	2222	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0016	2508	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0017	2508	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0018	2508	1	0	0	0	1	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0019	2508	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0020	2508	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0021	2508	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0022	2508	1	0	0	0	1	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0023	2508	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0024	2508	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0025	2508	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0026	2508	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0027	2508	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0028	2508	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0029	2508	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	c0030	2508	1	0	0	0	0	1	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRF1_chr6_46992708_47047332	1/0	c0001	2733	256	29	44	142	9	31	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0002	2733	76	31	11	33	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/1	c0003	2733	13	9	3	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0004	2733	9	2	5	0	1	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0005	2733	6	0	0	6	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0006	2733	6	3	3	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0007	2733	5	0	3	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0008	2733	5	5	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0009	2733	3	3	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0010	2733	3	2	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0011	2733	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0012	2733	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0013	2733	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0014	2733	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0015	2733	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0016	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0017	2733	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0018	2733	1	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0019	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0020	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0021	2733	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0022	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332