JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EGF_chr4_109907883_110018766	0/0	c0032	3624	1	0	0	0	1	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0033	3624	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0034	3624	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	c0035	3672	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGLN1_chr1_231358756_231427287	1/1	c0001	1281	202	50	34	82	11	23	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0002	1281	119	26	11	68	1	13	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0003	1281	5	0	0	5	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0004	1281	4	3	1	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0005	1260	3	0	0	3	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0006	1281	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0008	1281	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	c0010	1281	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN2_chr19_40794191_40813434	1/1	c0001	1224	325	77	61	130	15	40	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0002	1224	75	13	4	54	1	3	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0003	1224	7	7	0	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0004	1224	3	0	3	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0005	1224	2	0	0	0	0	2	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0006	1224	2	0	0	0	1	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0008	1224	1	0	0	1	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0009	1224	1	0	0	1	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0010	1224	1	0	0	0	0	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0011	1224	1	0	0	0	0	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	c0012	1224	1	0	0	0	1	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN3_chr14_33919227_33956074	1/1	c0001	720	420	95	70	197	16	40	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	c0002	720	3	3	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	c0003	720	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGR1_chr5_138460479_138474303	1/1	c0001	1632	347	73	79	134	16	43	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0002	1632	7	6	1	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0003	1632	1	0	0	1	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0004	1632	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0005	1632	1	0	0	1	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0006	1632	1	0	0	0	0	1	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0007	1632	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	c0008	1632	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR2_chr10_62806996_62821366	1/1	c0001	1431	369	71	70	172	14	40	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	c0002	1431	52	13	2	33	0	4	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	c0003	1431	3	3	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	c0004	1431	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	c0005	1431	1	1	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR3_chr8_22682659_22698480	1/1	c0001	1164	307	79	71	101	16	38	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0002	1164	58	4	7	43	2	2	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0003	1164	2	2	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0004	1164	2	1	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0005	1164	2	2	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0006	1164	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	c0008	1164	1	0	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480