JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EGR4_chr2_73285929_73298548	1/1	c0001	1461	203	38	51	68	13	31	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0002	1461	139	43	15	69	1	11	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0003	1461	10	9	1	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0004	1461	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0005	1461	1	0	0	1	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0006	1461	1	0	0	1	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0007	1461	1	0	1	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0008	1461	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	c0009	1461	1	0	0	1	0	0	copy fasta	EGR4	chr2	73285929	73298548
EHBP1L1_chr11_65571053_65597650	0/0	c0001	4572	138	21	25	66	3	23	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0002	4572	106	4	20	67	5	10	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/1	c0003	4572	58	16	13	22	2	4	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0004	4572	15	12	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0005	4572	15	14	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0006	4572	9	0	4	0	3	2	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0007	4572	8	6	2	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0008	4572	6	6	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0009	4572	4	0	1	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0010	4572	4	4	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0011	4572	3	0	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0012	4572	3	0	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0013	4572	2	2	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0014	4572	2	0	0	2	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0015	4572	2	0	0	2	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0016	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0017	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0018	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0019	4572	1	0	0	0	1	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0020	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0021	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0022	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0023	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0024	4561	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0025	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0026	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0027	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0028	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0029	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0030	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0031	4572	1	0	0	0	1	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0032	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0033	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0034	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0035	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0036	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0037	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0038	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0039	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0040	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0041	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650