JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EHBP1L1_chr11_65571053_65597650	0/0	c0042	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0043	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0044	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0045	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0046	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0047	4572	1	0	0	0	0	1	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0048	4572	1	0	0	1	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0049	4572	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	1/0	c0050	4572	1	0	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0051	4572	1	0	0	0	1	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	c0052	4572	1	0	1	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1_chr2_62700713_63051487	1/1	c0001	3483	168	39	31	65	10	21	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0002	3483	13	1	3	5	0	4	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0003	3483	6	6	0	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0004	3483	4	3	1	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0005	3483	2	0	2	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0006	3483	1	0	1	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0007	3483	1	0	1	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0008	3483	1	1	0	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0009	3483	1	0	1	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	c0010	3483	1	0	0	0	0	1	copy fasta	EHBP1	chr2	62700713	63051487
EHD1_chr11_64846642_64883621	0/1	c0001	1605	193	30	44	83	8	27	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	1/0	c0002	1605	123	38	7	64	2	11	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0003	1605	23	21	2	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0004	1605	5	5	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0005	1605	3	0	0	3	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0006	1605	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0007	1605	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0008	1605	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0009	1605	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0010	1605	1	0	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	c0012	1605	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD2_chr19_47708422_47748134	0/0	c0001	1632	156	10	36	76	11	23	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	1/0	c0002	1632	145	57	23	59	1	4	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/1	c0003	1632	16	3	4	1	3	4	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0004	1632	12	10	0	2	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0005	1632	8	0	0	8	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0006	1632	7	0	1	6	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0007	1632	7	7	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0008	1632	5	0	2	0	2	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0009	1632	5	1	0	0	0	4	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0010	1632	5	1	2	0	0	2	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0011	1632	4	0	4	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0012	1632	4	3	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0013	1632	4	0	2	0	0	2	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0014	1632	3	3	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0015	1632	3	0	1	1	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0016	1632	2	0	0	2	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0017	1632	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134