JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EHD2_chr19_47708422_47748134	0/0	c0018	1632	1	0	0	0	1	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0019	1632	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0020	1632	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0021	1632	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0022	1632	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0023	1632	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0024	1632	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0025	1632	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0026	1632	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0027	1632	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	c0028	1632	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD3_chr2_31229152_31274451	1/1	c0001	1608	364	89	61	160	16	36	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0002	1608	5	4	1	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0003	1608	4	0	0	0	0	4	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0004	1608	2	2	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0005	1608	1	1	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0006	1608	1	0	0	1	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	c0007	1608	1	0	0	1	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD4_chr15_41890933_41977557	1/1	c0001	1626	199	32	28	114	4	19	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0002	1626	108	51	22	12	5	18	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0003	1626	14	3	4	4	2	1	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0004	1626	12	11	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0005	1626	10	1	4	1	3	1	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0006	1626	7	0	2	0	0	5	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0007	1626	3	0	0	3	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0008	1626	3	0	0	3	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0009	1626	2	0	0	2	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	c0011	1626	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHF_chr11_34616093_34668288	1/0	c0001	903	259	69	52	107	8	22	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0002	903	91	10	16	55	1	9	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/1	c0003	903	30	7	5	3	3	11	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0004	903	11	0	1	10	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0005	903	9	0	2	6	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0006	903	6	6	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0007	903	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0008	903	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0009	903	1	0	0	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	c0010	903	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHHADH_chr3_185185624_185259049	1/1	c0001	2172	221	33	37	115	10	24	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0002	2172	36	3	9	19	1	4	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0003	2172	30	2	3	24	1	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0004	2172	24	21	3	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0005	2172	7	7	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0006	2172	7	7	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0007	2172	4	2	2	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0008	2172	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0009	2172	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0010	2172	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0011	2172	2	0	2	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049