JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EHHADH_chr3_185185624_185259049	0/0	c0012	2172	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0013	2172	1	0	0	0	0	1	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0014	2172	1	0	0	1	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0016	2172	1	0	0	0	0	1	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0017	2172	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0018	2172	1	0	0	1	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0019	2172	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0020	2172	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	c0021	2172	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHMT1_chr9_137614005_137841127	1/1	c0001	3897	60	5	19	15	6	13	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0002	3897	31	0	14	11	2	4	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0003	3897	15	15	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0004	3897	13	9	3	0	0	1	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0005	3897	10	4	3	0	0	3	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0006	3897	7	6	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0007	3897	7	7	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0008	3897	3	3	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0009	3897	3	3	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0010	3897	3	3	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0011	3897	2	1	0	1	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0012	3897	1	0	0	1	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0013	3897	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0014	3897	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0015	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0016	3897	1	0	0	0	0	1	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0017	3897	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0018	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0019	3897	1	0	0	0	0	1	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0020	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0021	3897	1	0	0	0	0	1	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0022	3897	1	0	1	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0023	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0024	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0025	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0026	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	c0027	3897	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT2_chr6_31874759_31902698	0/0	c0001	3633	172	77	33	39	7	16	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/1	c0002	3633	149	2	32	94	7	13	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0003	3633	50	7	9	23	4	7	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0004	3633	9	0	0	6	0	3	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0005	3633	5	0	5	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0006	3633	3	3	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0007	3633	2	0	0	1	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0008	3633	2	0	2	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0009	3633	2	0	0	2	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0010	3633	1	0	1	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0011	3633	1	0	1	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0012	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0013	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698