JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EHMT2_chr6_31874759_31902698	0/0	c0014	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0015	3633	1	0	1	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0016	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0017	3633	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0018	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0019	3633	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0020	3633	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0021	3633	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0022	3633	1	0	0	0	0	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0023	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0024	3633	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0025	3633	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0026	3633	1	0	0	1	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0027	3633	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	c0028	3633	1	1	0	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EI24_chr11_125564477_125589684	1/0	c0001	1023	224	50	42	108	7	16	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/1	c0002	1023	134	30	24	55	7	17	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	c0003	1023	2	2	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	c0004	1023	1	0	0	0	0	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	c0005	1023	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EID1_chr15_48873134_48885173	1/1	c0001	564	430	89	76	197	18	48	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	c0002	564	3	0	0	3	0	0	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	c0003	564	1	1	0	0	0	0	copy fasta	EID1	chr15	48873134	48885173
EID2B_chr19_39525987_39537852	0/0	c0001	486	295	72	54	123	13	33	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	1/1	c0002	486	74	9	18	36	2	7	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	c0003	486	48	7	0	40	1	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	c0004	486	1	0	0	1	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2_chr19_39533707_39545161	1/1	c0001	711	204	48	33	98	4	19	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0002	711	95	11	14	55	6	9	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0003	711	91	0	20	55	5	11	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0004	711	17	14	2	0	1	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0005	711	6	5	1	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0006	711	3	3	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0007	711	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0008	711	1	0	0	0	0	1	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0009	711	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	c0010	684	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID3_chr12_104298739_104310205	0/1	c0001	1002	205	38	34	99	8	25	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	1/0	c0002	1002	190	43	29	85	10	22	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0003	1002	12	10	2	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0004	1002	4	4	0	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0005	1002	4	3	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0006	1002	1	0	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0007	1002	1	0	1	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	c0008	1002	1	0	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EIF1AD_chr11_65991545_66007157	1/1	c0001	498	354	83	57	156	12	44	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	c0002	498	36	9	1	26	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	c0003	498	2	2	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	c0004	498	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	c0005	498	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157