JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF1AX_chrX_20119525_20146838	1/1	c0001	435	272	67	57	111	9	26	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	c0002	435	6	5	1	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AY_chrY_20570776_20598154	1/1	c0001	435	132	18	20	71	5	16	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1AY_chrY_20570776_20598154	0/0	c0002	434	1	0	0	1	0	0	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1B_chr3_40304707_40317424	1/1	c0001	342	407	100	58	187	14	46	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	c0002	342	1	0	0	1	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1_chr17_41683885_41697668	1/1	c0001	342	329	96	68	107	14	42	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	c0002	342	1	0	0	1	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF2AK1_chr7_6017247_6064175	1/0	c0001	1893	235	46	49	102	12	25	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/1	c0002	1893	89	39	18	21	3	7	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0003	1893	73	3	5	57	0	8	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0004	1893	3	3	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0005	1893	3	3	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0006	1893	2	0	0	0	0	2	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0007	1893	2	0	2	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0008	1893	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0009	1893	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0010	1893	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0011	1893	1	0	0	0	0	1	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0012	1893	1	0	0	0	0	1	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0013	1893	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0014	1893	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0015	1893	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0016	1893	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0017	1893	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	c0018	1893	1	0	0	0	1	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK2_chr2_37094210_37161980	1/1	c0001	1656	311	79	59	117	17	37	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	c0002	1656	9	4	3	0	1	1	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	c0003	1656	5	5	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	c0004	1656	1	0	0	1	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK3_chr2_88551741_88632464	0/0	c0001	3348	97	19	19	46	4	9	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/1	c0002	3348	91	2	24	49	5	10	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0003	3351	81	12	8	43	5	13	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0004	3348	42	33	6	1	0	2	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0005	3348	35	10	6	7	1	11	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0006	3348	3	3	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0007	3351	2	0	0	1	0	1	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0008	3348	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0009	3348	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0010	3348	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0011	3348	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	1/0	c0012	3351	1	0	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0013	3351	1	0	0	1	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0014	3351	1	0	0	0	1	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0015	3348	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0016	3348	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0017	3348	1	0	1	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	c0018	3348	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK4_chr15_39929115_40040591	0/0	c0001	4950	104	11	7	81	1	4	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0002	4950	56	35	8	4	4	5	copy fasta	EIF2AK4	chr15	39929115	40040591