JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF2AK4_chr15_39929115_40040591	0/0	c0003	4950	54	3	11	39	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0004	4950	51	11	11	21	1	7	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0005	4950	18	7	3	6	2	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0006	4956	14	3	3	3	0	5	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0007	4956	12	0	1	9	0	2	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0008	4950	6	1	1	1	1	2	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0009	4950	4	0	0	4	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0010	4950	4	2	0	2	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0011	4950	4	0	0	4	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0012	4951	4	0	0	2	0	2	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/1	c0013	4950	4	1	1	0	1	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0014	4950	4	0	3	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0015	4950	3	3	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0016	4950	2	1	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0017	4951	2	2	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0018	4950	2	1	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0019	4950	2	0	2	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0020	4950	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0021	4950	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0022	4950	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0023	4951	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0024	4950	1	0	0	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0025	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0026	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0027	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0028	4950	1	0	0	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0029	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0030	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0031	4950	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0032	4951	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0033	4950	1	0	0	0	0	1	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0034	4950	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0035	4950	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	1/0	c0036	4950	1	0	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	c0037	4956	1	0	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2A_chr3_150541787_150591016	1/0	c0001	1758	198	54	38	85	5	15	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/1	c0002	1758	138	6	25	81	6	19	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0003	1758	49	25	13	4	1	6	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0004	1758	5	5	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0005	1758	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0006	1758	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0007	1758	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	c0008	1758	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2B1_chr12_123615406_123638686	1/1	c0001	918	315	89	62	108	18	36	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	c0002	918	4	4	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	c0003	918	2	0	0	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	c0004	918	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B2_chr14_74997921_75017366	1/1	c0001	1056	322	80	60	131	12	37	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	c0002	1056	2	0	0	2	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	c0003	1056	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366