JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF2B2_chr14_74997921_75017366	0/0	c0004	1056	1	0	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B3_chr1_44845522_44991595	1/0	c0001	1359	204	45	30	92	11	25	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/1	c0002	1359	113	32	24	40	4	12	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	c0003	1359	1	0	0	0	0	1	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	c0004	1359	1	0	0	1	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	c0005	1359	1	1	0	0	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	c0006	1359	1	0	0	0	1	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B4_chr2_27359352_27375338	1/1	c0001	1572	362	74	68	160	13	45	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0002	1572	3	0	2	0	1	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0003	1572	3	2	1	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0004	1572	2	0	2	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0005	1572	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0006	1572	1	1	0	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0007	1572	1	1	0	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0008	1572	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0009	1572	1	0	1	0	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0010	1572	1	0	0	0	0	1	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	c0012	1572	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B5_chr3_184130358_184150311	1/1	c0001	2166	249	69	52	94	9	23	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0002	2166	166	23	27	97	3	16	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0003	2166	4	0	1	0	0	3	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0004	2166	2	2	0	0	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0005	2166	2	0	0	0	0	2	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0006	2166	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0007	2166	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	c0008	2166	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2D_chr1_206586642_206617465	1/1	c0001	1755	395	71	67	208	12	35	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0002	1755	23	20	1	0	0	2	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0003	1755	3	3	0	0	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0004	1755	1	0	0	0	0	1	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0005	1755	1	1	0	0	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0006	1755	1	0	0	1	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0007	1755	1	0	0	1	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	c0008	1755	1	1	0	0	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2S1_chr14_67355328_67391516	1/1	c0001	948	351	89	78	148	6	28	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	c0002	948	14	1	0	12	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	c0003	948	2	2	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	c0004	912	1	0	0	0	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S2_chr20_34083309_34117243	1/1	c0001	1002	344	82	68	132	18	42	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0002	1002	12	0	0	12	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0003	1002	2	2	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0004	1002	1	0	0	0	0	1	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0005	1002	1	0	0	1	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	c0007	1002	1	0	0	0	0	1	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S3B_chr12_10500890_10513525	0/1	c0001	1419	245	37	46	131	7	23	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0002	1419	71	3	11	39	6	12	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0003	1419	47	18	5	14	5	5	copy fasta	EIF2S3B	chr12	10500890	10513525