JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF2S3B_chr12_10500890_10513525	0/0	c0004	1419	21	18	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0005	1419	10	7	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0006	1419	7	0	0	7	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	1/0	c0007	1419	4	3	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0008	1419	3	3	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0009	1419	3	0	0	0	0	3	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0010	1419	2	2	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0011	1419	2	0	0	0	0	2	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0012	1419	2	0	2	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0013	1419	1	0	0	0	0	1	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0014	1419	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0015	1419	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0016	1419	1	0	0	1	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	c0017	1419	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3_chrX_24049956_24083810	1/0	c0001	1419	158	50	18	71	3	15	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/1	c0002	1419	107	13	32	50	5	6	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0003	1419	19	2	5	0	3	9	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0004	1419	6	5	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0005	1418	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0006	1419	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0007	1419	1	0	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	c0008	1420	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF3A_chr10_119028670_119085817	0/1	c0001	4149	252	34	50	123	16	28	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	1/0	c0002	4149	50	35	4	10	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0003	4149	14	0	0	12	0	2	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0004	4149	6	6	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0005	4149	4	0	0	4	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0006	4149	3	3	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0007	4119	3	3	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0008	4149	2	0	0	2	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0009	4149	2	0	2	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0010	4149	2	2	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0011	4149	2	0	2	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0012	4149	2	2	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0013	4149	1	0	0	0	0	1	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0014	4119	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0015	4149	1	0	0	0	0	1	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0016	4149	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0017	4149	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0018	4149	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0019	4149	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	c0020	4149	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3B_chr7_2349827_2385745	0/1	c0001	2445	149	26	36	65	8	13	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	1/0	c0002	2445	117	40	24	35	6	11	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0003	2445	65	4	10	36	0	15	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0004	2445	16	1	7	8	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0005	2445	6	5	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0006	2445	5	5	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0007	2445	3	0	0	0	0	3	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0008	2445	2	1	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745