JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF3B_chr7_2349827_2385745	0/0	c0009	2445	2	2	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0010	2445	2	2	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0011	2445	2	2	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0012	2445	2	2	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0013	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0014	2445	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0015	2445	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0016	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0017	2445	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0018	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0019	2445	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0020	2445	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0021	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0022	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0023	2445	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0024	2445	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	c0025	2445	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3CL_chr16_28374715_28408841	0/0	c0001	2742	126	33	17	53	6	17	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0002	2742	13	1	2	9	0	1	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0003	2742	6	5	1	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0004	2745	5	4	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0005	2742	4	4	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0006	2742	4	0	4	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0007	2742	3	0	0	3	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0008	2742	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0009	2742	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0010	2742	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0011	2742	1	0	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0012	2742	1	0	0	0	0	1	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0013	2742	1	0	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0014	2742	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0015	2742	1	0	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0016	2742	1	0	0	0	0	1	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0017	2742	1	0	0	1	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	c0018	2742	1	1	0	0	0	0	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3C_chr16_28706464_28740596	0/0	c0001	2742	73	16	2	40	0	15	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0002	2742	16	0	0	10	0	6	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0003	2742	7	0	0	7	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0004	2742	1	1	0	0	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0005	2742	1	1	0	0	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0006	2742	1	0	0	0	0	1	copy fasta	EIF3C	chr16	28706464	28740596
EIF3C_chr16_28706464_28740596	0/0	c0007	2742	1	0	0	1	0	0	copy fasta	EIF3C	chr16	28706464	28740596
EIF3D_chr22_36505855_36534166	1/1	c0001	1647	351	57	67	174	12	39	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0002	1647	26	18	4	1	0	3	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0003	1647	11	11	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0004	1647	2	2	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0005	1647	2	2	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0006	1647	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0007	1647	1	0	1	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0008	1647	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166