JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF3D_chr22_36505855_36534166	0/0	c0009	1647	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0010	1647	1	1	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0011	1647	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0012	1647	1	0	0	1	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	c0013	1647	1	1	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3E_chr8_108196216_108253717	1/1	c0001	1338	343	80	58	148	14	41	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	c0002	1338	2	2	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	c0003	1338	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	c0004	1338	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	c0005	1338	1	0	0	0	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3F_chr11_7982337_8006852	0/1	c0001	1074	228	32	38	126	6	25	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	1/0	c0002	1074	108	37	18	33	8	11	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0003	1074	20	8	8	0	1	3	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0004	1074	12	7	2	0	1	2	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0005	1074	11	0	8	1	1	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0006	1074	6	5	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0007	1074	2	0	0	2	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0008	1074	2	2	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0009	1074	1	0	0	0	1	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0010	1074	1	0	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0011	1074	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0012	1074	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	c0013	1074	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3G_chr19_10110014_10124899	1/1	c0001	963	235	53	38	110	9	23	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0002	963	192	27	45	84	9	27	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0003	963	15	15	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0004	963	9	0	0	9	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0005	963	3	0	3	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0006	963	2	2	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0007	963	1	0	0	1	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	c0008	963	1	1	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3H_chr8_116637130_116760823	1/1	c0001	1059	335	94	60	147	8	24	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	c0002	1059	1	0	0	1	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3I_chr1_32217407_32236604	1/1	c0001	978	383	89	70	174	14	34	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	c0002	978	1	1	0	0	0	0	copy fasta	EIF3I	chr1	32217407	32236604
EIF3J_chr15_44532147_44567803	1/1	c0001	777	247	53	49	110	8	25	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	c0002	777	41	26	1	12	0	2	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	c0003	777	3	0	0	2	0	1	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	c0004	777	1	1	0	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3K_chr19_38614188_38641954	1/1	c0001	657	393	79	68	186	14	44	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	c0002	657	4	4	0	0	0	0	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	c0003	657	2	2	0	0	0	0	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	c0004	657	1	1	0	0	0	0	copy fasta	EIF3K	chr19	38614188	38641954
EIF3L_chr22_37844419_37894407	1/1	c0001	1695	161	28	33	69	9	20	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0002	1695	125	46	27	35	4	13	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0003	1695	28	9	2	12	0	5	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0004	1695	1	0	0	1	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0005	1695	1	0	0	0	1	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0006	1695	1	1	0	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	c0007	1695	1	0	0	1	0	0	copy fasta	EIF3L	chr22	37844419	37894407