JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF3M_chr11_32578831_32611264	1/1	c0001	1125	338	88	73	117	12	46	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	c0002	1125	3	2	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	c0003	1125	2	2	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	c0004	1125	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF4A1_chr17_7567825_7584006	0/1	c0001	1221	207	41	45	83	13	24	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	1/0	c0002	1221	93	33	20	35	0	4	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0003	1221	76	0	12	62	1	1	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0004	1221	50	18	5	15	4	8	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0005	1221	2	2	0	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0008	1221	1	0	0	0	0	1	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0010	1221	1	0	0	0	0	1	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0011	1221	1	0	0	0	0	1	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0012	1221	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	c0013	1221	1	1	0	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A2_chr3_186778577_186794897	1/1	c0001	1224	432	94	74	199	18	45	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	c0002	1224	22	1	0	19	0	2	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	c0003	1224	1	0	0	0	0	1	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	c0004	1224	1	1	0	0	0	0	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A3_chr17_80129369_80152128	1/1	c0001	1236	359	84	60	167	11	35	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0002	1236	47	4	15	16	5	7	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0003	1236	6	6	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0004	1236	3	0	0	3	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0005	1236	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0006	1236	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0007	1236	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	c0008	1236	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4B_chr12_53001456_53047215	0/1	c0001	1836	258	40	60	110	10	37	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0002	1836	91	43	5	41	0	2	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	1/0	c0003	1836	8	7	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0004	1836	5	0	5	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0005	1836	5	5	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0006	1836	2	0	0	2	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0007	1836	1	0	0	0	0	1	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0008	1806	1	0	0	1	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	c0009	1836	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4E1B_chr5_176625675_176651644	1/1	c0001	729	405	84	76	187	16	40	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0002	729	7	7	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0003	729	4	0	0	4	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0004	729	3	3	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0005	729	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0006	729	1	0	0	1	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	c0007	729	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E2_chr2_232545689_232574210	1/1	c0001	738	418	93	72	194	16	41	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E2_chr2_232545689_232574210	0/0	c0002	738	2	0	0	1	0	1	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E2_chr2_232545689_232574210	0/0	c0003	738	1	1	0	0	0	0	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E2_chr2_232545689_232574210	0/0	c0004	738	1	0	0	1	0	0	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E3_chr3_71670414_71730402	1/1	c0001	675	396	94	78	169	12	41	copy fasta	EIF4E3	chr3	71670414	71730402