JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF4E3_chr3_71670414_71730402	0/0	c0002	675	1	0	0	1	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	c0003	675	1	0	0	0	0	1	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4EBP1_chr8_38025534_38065365	1/1	c0001	357	339	88	54	145	10	40	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	c0002	357	2	0	2	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	c0003	357	1	0	1	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	c0004	357	1	0	1	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	c0005	357	1	0	0	1	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP2_chr10_70399145_70433618	0/1	c0001	363	204	37	37	103	5	21	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	1/0	c0002	363	194	53	42	69	6	23	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	c0003	363	23	0	1	22	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	c0004	363	1	0	0	0	1	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP3_chr5_140542662_140554576	1/1	c0001	303	373	76	70	173	18	34	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	c0002	303	10	9	1	0	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	c0003	303	9	8	1	0	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	c0004	288	1	1	0	0	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4EBP3_chr5_140542662_140554576	0/0	c0005	303	1	0	0	1	0	0	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4ENIF1_chr22_31434367_31494842	1/0	c0001	2958	212	39	54	98	9	11	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/1	c0002	2958	68	2	2	53	1	9	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0003	2958	60	24	14	3	4	15	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0004	2958	8	8	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0005	2958	4	4	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0006	2958	4	0	0	4	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0007	2958	2	1	0	0	0	1	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0008	2958	1	0	0	0	0	1	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0009	2958	1	1	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0010	2958	1	0	0	0	0	1	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0011	2958	1	1	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0012	2958	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0013	2958	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0014	2958	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	c0015	2958	1	0	0	1	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4E_chr4_98874276_98934133	1/1	c0001	654	283	89	50	116	3	23	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	c0002	654	16	3	6	0	1	6	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	c0003	654	1	0	0	0	0	1	copy fasta	EIF4E	chr4	98874276	98934133
EIF4G1_chr3_184309606_184340353	0/0	c0001	4800	227	71	31	105	8	12	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0002	4800	76	2	10	49	3	12	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/1	c0003	4800	39	5	8	7	4	14	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0004	4800	8	0	0	8	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0005	4791	5	0	5	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0006	4800	4	1	0	2	0	1	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0007	4800	3	3	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0008	4800	3	2	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0009	4800	2	1	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0010	4800	2	0	2	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0011	4800	2	0	0	0	2	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	1/0	c0012	4800	1	0	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0013	4800	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0014	4800	1	0	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0015	4800	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0016	4800	1	0	1	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353