JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF4G1_chr3_184309606_184340353	0/0	c0017	4800	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0018	4800	1	0	0	0	1	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0019	4800	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0020	4800	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0021	4800	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0022	4800	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0023	4800	1	0	0	0	0	1	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	c0024	4800	1	1	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G2_chr11_10792054_10813926	0/1	c0001	2724	363	44	62	194	14	48	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0002	2724	42	38	4	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0003	2724	2	2	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0004	2724	1	0	1	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	1/0	c0005	2724	1	0	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0006	2724	1	1	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0007	2724	1	1	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	c0008	2724	1	0	1	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G3_chr1_20801479_21181897	0/1	c0001	4926	273	60	48	111	16	37	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	1/0	c0002	4926	24	20	3	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0003	4926	3	2	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0004	4926	2	2	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0005	4926	2	1	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0006	4926	2	2	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0007	4926	1	0	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0008	4926	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0009	4926	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0010	4926	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0011	4926	1	0	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	c0012	4926	1	0	0	0	0	1	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4H_chr7_74169356_74202096	1/1	c0001	747	373	90	64	167	10	40	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	c0002	747	1	0	0	1	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF5A2_chr3_170883418_170913637	1/1	c0001	462	394	86	78	172	14	42	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5AL1_chr10_79507533_79521440	1/1	c0001	465	336	73	73	136	16	36	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	c0002	465	73	9	4	56	2	2	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	c0003	465	17	13	1	1	0	2	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	c0004	465	2	0	1	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	c0005	465	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	c0006	465	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5A_chr17_7302628_7317463	1/1	c0001	465	423	94	79	190	16	42	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	c0002	465	1	0	1	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5B_chr2_99332389_99406326	1/1	c0001	3663	108	16	16	63	1	10	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0002	3663	94	12	25	51	2	4	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0003	3663	79	40	7	19	2	11	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0004	3663	44	8	22	3	4	7	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0005	3663	6	0	4	1	0	1	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0006	3663	3	2	0	0	1	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0007	3663	2	1	0	0	0	1	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0008	3663	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0009	3663	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0010	3663	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0011	3663	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326