JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EIF5B_chr2_99332389_99406326	0/0	c0012	3663	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	c0013	3663	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5_chr14_103329237_103350025	1/1	c0001	1296	429	91	76	197	16	47	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0002	1296	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0003	1296	1	1	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0004	1296	1	1	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0005	1296	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0006	1296	1	1	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0007	1296	1	0	0	0	0	1	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0008	1296	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0009	1296	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	c0010	1296	1	0	0	1	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF6_chr20_35273918_35289772	1/1	c0001	738	382	94	70	156	18	42	copy fasta	EIF6	chr20	35273918	35289772
EIF6_chr20_35273918_35289772	0/0	c0002	738	2	0	0	2	0	0	copy fasta	EIF6	chr20	35273918	35289772
EIF6_chr20_35273918_35289772	0/0	c0003	738	1	0	1	0	0	0	copy fasta	EIF6	chr20	35273918	35289772
EIF6_chr20_35273918_35289772	0/0	c0004	738	1	0	1	0	0	0	copy fasta	EIF6	chr20	35273918	35289772
EIPR1_chr2_3183970_3382818	1/1	c0001	1164	233	76	49	65	12	29	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	c0002	1164	12	7	0	1	2	2	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	c0003	1164	2	0	0	2	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	c0004	1164	1	0	1	0	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	c0005	1164	1	1	0	0	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	c0006	1164	1	0	0	0	0	1	copy fasta	EIPR1	chr2	3183970	3382818
ELAC1_chr18_50963040_50993121	1/1	c0001	1092	376	93	69	167	12	33	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	c0002	1092	3	3	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	c0003	1092	2	0	0	2	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	c0004	1092	1	0	0	0	0	1	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	c0005	1092	1	0	1	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	c0006	1092	1	0	0	1	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC2_chr17_12986612_13023027	1/1	c0001	2481	289	48	51	143	13	32	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0002	2481	43	18	12	4	1	8	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0003	2481	12	1	6	0	2	3	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0004	2481	11	0	0	11	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0005	2481	10	9	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0006	2481	6	1	1	0	2	2	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0007	2481	5	5	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0008	2481	5	5	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0009	2481	4	4	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0010	2481	2	0	0	2	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0011	2481	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0012	2481	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0013	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0014	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0015	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0016	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0017	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0018	2481	1	0	0	0	0	1	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0019	2481	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0020	2481	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	c0021	2481	1	0	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELANE_chr19_847303_861243	0/1	c0001	804	374	85	66	175	9	38	copy fasta	ELANE	chr19	847303	861243