JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELANE_chr19_847303_861243	0/0	c0002	804	7	0	1	0	4	2	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0003	804	4	0	2	0	1	1	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0004	804	3	0	0	3	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0005	804	3	2	1	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0006	804	2	0	0	2	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0007	804	2	2	0	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0008	804	2	0	0	2	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0009	804	1	0	1	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0010	804	1	0	0	0	0	1	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0011	804	1	0	0	1	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0012	804	1	1	0	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0013	804	1	0	0	1	0	0	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	c0014	815	1	0	1	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELAPOR1_chr1_109109115_109211781	0/0	c0001	3042	68	15	17	27	2	7	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/1	c0002	3042	48	6	9	21	3	8	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0003	3042	15	13	2	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0004	3042	15	10	2	0	3	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0005	3042	9	8	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0006	3042	8	4	3	0	0	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0007	3042	7	2	4	0	1	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0008	3042	5	0	1	4	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0009	3042	5	0	3	0	2	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0010	3042	4	1	1	0	2	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0011	3042	4	0	2	2	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0012	3042	3	3	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0013	3042	3	2	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0014	3042	3	3	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0015	3042	2	1	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0016	3042	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0017	3042	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	1/0	c0018	3042	2	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0019	3042	2	0	0	0	0	2	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0020	3042	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0021	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0022	3042	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0023	3042	1	0	0	0	0	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0024	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0025	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0026	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0027	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0028	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0029	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0030	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0031	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0032	3042	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0033	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0034	3042	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0035	3042	1	0	0	0	1	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0036	3042	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0037	3042	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781