JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELAPOR1_chr1_109109115_109211781	0/0	c0038	3042	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0039	3042	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0040	3042	1	0	0	0	0	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	c0041	3042	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR2_chr7_86871906_87064654	1/1	c0001	3090	144	39	28	63	7	5	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0002	3090	14	13	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0003	3090	12	7	3	0	1	1	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0004	3090	8	8	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0005	3090	7	5	1	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0006	3090	6	5	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0007	3090	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0008	3090	1	0	0	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0009	3090	1	0	0	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0010	3090	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	c0011	3090	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAVL1_chr19_7953573_8010641	1/1	c0001	981	223	66	43	75	10	27	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	c0002	981	49	14	15	11	6	3	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	c0003	981	2	2	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	c0004	981	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	c0005	981	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL2_chr9_23685104_23831240	1/1	c0001	1080	312	65	57	138	12	38	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0002	1080	33	5	6	18	0	4	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0003	1080	2	0	0	0	0	2	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0006	1080	1	0	1	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0007	1080	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	c0008	1080	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL3_chr19_11446326_11486046	1/1	c0001	1104	249	68	51	78	13	37	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0002	1104	29	11	12	3	1	2	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0003	1104	26	3	4	18	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0004	1104	8	8	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0005	1104	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0007	1104	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0008	1104	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0009	1104	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	c0010	1104	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL4_chr1_50103920_50208772	0/1	c0001	1101	215	37	39	102	12	24	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	1/0	c0002	1101	61	53	7	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELF1_chr13_40926924_41024316	1/0	c0001	1860	175	38	10	112	1	13	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0002	1860	95	5	33	38	6	13	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/1	c0003	1860	46	13	8	18	5	1	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0004	1860	13	5	0	6	0	2	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0005	1860	10	0	0	9	0	1	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0006	1860	8	6	2	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0007	1860	3	0	0	3	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0008	1860	2	2	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0009	1860	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0010	1860	1	0	0	0	0	1	copy fasta	ELF1	chr13	40926924	41024316