JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELF1_chr13_40926924_41024316	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0014	1860	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0015	1860	1	0	1	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0016	1860	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0017	1860	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	c0018	1860	1	0	0	0	0	1	copy fasta	ELF1	chr13	40926924	41024316
ELF2_chr4_139052265_139182218	1/1	c0001	1782	322	75	57	143	12	33	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	c0002	1782	18	9	0	9	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	c0003	1782	2	0	1	0	0	1	copy fasta	ELF2	chr4	139052265	139182218
ELF3_chr1_202005587_202022183	0/1	c0001	1116	189	25	29	106	7	21	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0002	1116	143	39	20	68	4	12	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	1/0	c0003	1116	100	18	33	32	4	12	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0004	1116	12	8	0	0	3	1	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0005	1116	3	3	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0006	1116	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0007	1116	2	0	0	2	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0008	1116	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0009	1116	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0010	1116	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0011	1116	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0012	1116	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	c0013	1116	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF4_chrX_130058955_130115497	1/1	c0001	1992	224	67	32	99	5	19	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0002	1992	44	4	17	13	3	7	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0003	1990	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0004	1992	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0005	1998	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0006	1992	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0007	1992	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	c0008	1991	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF5_chr11_34473791_34518794	1/0	c0001	768	374	93	55	194	11	20	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/1	c0002	768	51	1	21	9	5	14	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	c0003	768	10	0	0	10	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	c0004	768	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELFN1_chr7_1665277_1752946	1/0	c0001	2487	223	67	49	71	12	23	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/1	c0002	2487	34	0	4	15	1	13	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0003	2487	6	6	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0004	2487	5	1	0	4	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0005	2487	5	5	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0006	2487	3	3	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0007	2487	3	3	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0008	2487	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0009	2487	2	0	0	0	0	2	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0010	2487	2	0	0	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0011	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0012	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0013	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0014	2487	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946