JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELFN1_chr7_1665277_1752946	0/0	c0015	2487	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0016	2487	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0017	2487	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0018	2487	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0019	2487	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0020	2487	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0021	2487	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0022	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0023	2487	1	0	0	0	1	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0024	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0025	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0026	2487	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	c0027	2487	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN2_chr22_37362960_37432479	0/0	c0001	2463	118	37	23	43	6	9	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/1	c0002	2463	104	21	18	47	3	14	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	1/0	c0003	2463	71	14	9	30	3	14	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0004	2463	6	0	3	0	3	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0005	2463	5	5	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0006	2463	5	3	1	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0007	2463	4	4	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0008	2463	4	4	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0009	2463	4	1	1	1	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0010	2463	3	3	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0011	2463	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0012	2463	1	0	0	0	1	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0013	2463	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0014	2463	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0015	2463	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0016	2463	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0017	2463	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0018	2463	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0019	2463	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	c0020	2463	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELK1_chrX_47630521_47655563	1/1	c0001	1287	221	41	44	96	11	27	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0002	1287	39	24	1	13	0	1	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0003	1287	6	6	0	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0004	1287	4	3	1	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0005	1287	2	2	0	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0006	1290	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0007	1287	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0008	1287	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	c0009	1287	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK3_chr12_96189375_96274824	1/1	c0001	1224	314	77	73	112	14	36	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0002	1224	30	11	1	13	2	3	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0003	1224	2	0	0	2	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0004	1224	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0005	1224	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	c0008	1224	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824